NIH Proteome Special Interest Group


Mass Spectrometry Software on the Internet

Symposium Information:

  • May 21, 2001 Symposium Schedule

  • Symposium Sponsors /
    Organizing Committee

  • ProtIG home page

    		•

    Other proteome links:

  • NIH Mass Spectrometry Interest Group

  • Proteome Software on the Internet

  • Sources of Proteome Information

    		•

    Software Produced at NIH:

    Protein digestion software (SMSF, NIDDK)
    The NCBI protein database (NCBI, NLM)
    Identify a protein based on its molecular weight (SMSF, NIDDK)
    Molecular mass/formula and electrospray calculators (SMSF, NIDDK)
    Flicker comparison of 2D gel images across the Internet (NCI, Frederick)
    2DWG meta-database of 2D protein gel images found on the Internet (NCI, Frederick)
    Table of links to 2D gel electrophoresis database servers on the Web (NCI, Frederick)
    2D protein gel image and spreadsheet databases using the dbEngine web search engine (NCI, Frederick)

    Software Available Elsewhere:

    PROWL ....protein identification tools from Rockefeller University
    Mascot ....protein digest and identification software
    ProteinProspector ....proteomics tools for mining sequence databases in conjunction with MS
    Canadian mirror of the expasy tools ....many pieces of software for proteomics research ...a faster site
    AAcompIdent ....identify a protein from its amino acid composition
    AACompSim ....identify proteins with similar amino acid composition
    Compute pI/Mw ....theoretical PI and molecular weight cacluations for a protein
    FindMod ....predict post-translational modifications and find single aa substitutions in peptides
    MOWSE ....identify proteins from peptide digest masses
    MultiIdent ....identify proteins from pI, molecular weight and aa compositions
    PeptIdent ....identify proteins from pI, molecular weight and peptide mass fingerprinting
    PeptideMass ....computes masses of peptides from an enzyme digest on a protein
    ProFound ....protein identification by peptide mapping
    TagIdent ....identify a protein by pI and molecular weight, or by sequence tag (e.g. 6 aa's in sequence)
    Prediction servers at CBS ....prediction of glycosylation sites on proteins, etc
    A Mass Spectrometry and Biotechnology Software Resource ....links to many software packages
    Packages of software from an Australian laboratory
    Deltamass ....A listing of mass differences caused by modifications to aa or aa substitutions
    Deltamass ....A listing of mass differences caused by modifications to aa or aa substitutions
    iProClass ....software for retrieving/matching protein sequences

    This site was developed by Lewis Pannell. Please contact him by email at L_Pannell@nih.gov with any problems or suggestions. Thanks!